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hl7 priv samples MolecularSequence MolecularSequence-sequence-complex-variant.json
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priv/samples/MolecularSequence/MolecularSequence-sequence-complex-variant.json

{"resourceType":"MolecularSequence","id":"sequence-complex-variant","text":{"status":"generated","div":"\u003cdiv xmlns\u003d\"http://www.w3.org/1999/xhtml\"\u003e\u003cp\u003e\u003cb\u003eGenerated Narrative: MolecularSequence\u003c/b\u003e\u003ca name\u003d\"sequence-complex-variant\"\u003e \u003c/a\u003e\u003c/p\u003e\u003cdiv style\u003d\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"\u003e\u003cp style\u003d\"margin-bottom: 0px\"\u003eResource MolecularSequence \u0026quot;sequence-complex-variant\u0026quot; \u003c/p\u003e\u003c/div\u003e\u003cp\u003e\u003cb\u003eidentifier\u003c/b\u003e: id: ?ngen-9? (use: OFFICIAL)\u003c/p\u003e\u003cp\u003e\u003cb\u003etype\u003c/b\u003e: dna\u003c/p\u003e\u003cp\u003e\u003cb\u003especimen\u003c/b\u003e: \u003ca href\u003d\"broken-link.html\"\u003eSpecimen/genetics-example1-somatic: Molecular Specimen ID: MLD45-Z4-1234\u003c/a\u003e\u003c/p\u003e\u003cp\u003e\u003cb\u003edevice\u003c/b\u003e: \u003cspan\u003e: 12 lead EKG Device Metric\u003c/span\u003e\u003c/p\u003e\u003cp\u003e\u003cb\u003eperformer\u003c/b\u003e: \u003ca href\u003d\"organization-example.html\"\u003eOrganization/hl7: HL7\u003c/a\u003e \u0026quot;Health Level Seven International\u0026quot;\u003c/p\u003e\u003cblockquote\u003e\u003cp\u003e\u003cb\u003erelative\u003c/b\u003e\u003c/p\u003e\u003cp\u003e\u003cb\u003ecoordinateSystem\u003c/b\u003e: 0-based interval counting \u003cspan style\u003d\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"\u003e (\u003ca href\u003d\"https://loinc.org/\"\u003eLOINC\u003c/a\u003e#LA30100-4)\u003c/span\u003e\u003c/p\u003e\u003ch3\u003eStartingSequences\u003c/h3\u003e\u003ctable class\u003d\"grid\"\u003e\u003ctr\u003e\u003ctd\u003e-\u003c/td\u003e\u003ctd\u003e\u003cb\u003eSequence[x]\u003c/b\u003e\u003c/td\u003e\u003ctd\u003e\u003cb\u003eWindowStart\u003c/b\u003e\u003c/td\u003e\u003ctd\u003e\u003cb\u003eWindowEnd\u003c/b\u003e\u003c/td\u003e\u003ctd\u003e\u003cb\u003eStrand\u003c/b\u003e\u003c/td\u003e\u003c/tr\u003e\u003ctr\u003e\u003ctd\u003e*\u003c/td\u003e\u003ctd\u003eNC_000002.12 \u003cspan style\u003d\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"\u003e (nuccore#NC_000002.12)\u003c/span\u003e\u003c/td\u003e\u003ctd\u003e128273724\u003c/td\u003e\u003ctd\u003e128273754\u003c/td\u003e\u003ctd\u003ewatson\u003c/td\u003e\u003c/tr\u003e\u003c/table\u003e\u003ch3\u003eEdits\u003c/h3\u003e\u003ctable class\u003d\"grid\"\u003e\u003ctr\u003e\u003ctd\u003e-\u003c/td\u003e\u003ctd\u003e\u003cb\u003eStart\u003c/b\u003e\u003c/td\u003e\u003ctd\u003e\u003cb\u003eEnd\u003c/b\u003e\u003c/td\u003e\u003ctd\u003e\u003cb\u003eReplacementSequence\u003c/b\u003e\u003c/td\u003e\u003ctd\u003e\u003cb\u003eReplacedSequence\u003c/b\u003e\u003c/td\u003e\u003c/tr\u003e\u003ctr\u003e\u003ctd\u003e*\u003c/td\u003e\u003ctd\u003e128273724\u003c/td\u003e\u003ctd\u003e128273736\u003c/td\u003e\u003ctd\u003eCTCATTGT\u003c/td\u003e\u003ctd\u003eCTCCATTGCATGCGTT\u003c/td\u003e\u003c/tr\u003e\u003c/table\u003e\u003c/blockquote\u003e\u003c/div\u003e"},"identifier":[{"use":"official"}],"type":"dna","specimen":{"reference":"Specimen/genetics-example1-somatic","display":"Molecular Specimen ID: MLD45-Z4-1234"},"device":{"display":"12 lead EKG Device Metric"},"performer":{"reference":"Organization/hl7","display":"HL7"},"relative":[{"coordinateSystem":{"coding":[{"system":"http://loinc.org","code":"LA30100-4","display":"0-based interval counting"}]},"startingSequence":{"sequenceCodeableConcept":{"coding":[{"system":"http://www.ncbi.nlm.nih.gov/nuccore","code":"NC_000002.12"}]},"windowStart":128273724,"windowEnd":128273754,"strand":"watson"},"edit":[{"start":128273724,"end":128273736,"replacementSequence":"CTCATTGT","replacedSequence":"CTCCATTGCATGCGTT"}]}],"meta":{"tag":[{"system":"http://terminology.hl7.org/CodeSystem/v3-ActReason","code":"HTEST","display":"test health data"}]}}