google_api_genomics

# Copyright 2017 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# limitations under the License.


# NOTE: This class is auto generated by the swagger code generator program.
# https://github.com/swagger-api/swagger-codegen.git
# Do not edit the class manually.

defmodule GoogleApi.Genomics.V1.Model.Variant do
  @moduledoc """
  A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set.  For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)  Each of the calls on a variant represent a determination of genotype with respect to that variant. For example, a call might assign probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call belongs to a call set, which contains related calls typically from one sample.

  ## Attributes

  - info (Map[String, List[ErrorUnknown]]): A map of additional variant information. This must be of the form map<string, string[]> (string key mapping to a list of string values). Defaults to: `null`.
  - alternateBases (List[String]): The bases that appear instead of the reference bases. Defaults to: `null`.
  - calls (List[VariantCall]): The variant calls for this particular variant. Each one represents the determination of genotype with respect to this variant. Defaults to: `null`.
  - created (String): The date this variant was created, in milliseconds from the epoch. Defaults to: `null`.
  - end (String): The end position (0-based) of this variant. This corresponds to the first base after the last base in the reference allele. So, the length of the reference allele is (end - start). This is useful for variants that don't explicitly give alternate bases, for example large deletions. Defaults to: `null`.
  - filter (List[String]): A list of filters (normally quality filters) this variant has failed. `PASS` indicates this variant has passed all filters. Defaults to: `null`.
  - id (String): The server-generated variant ID, unique across all variants. Defaults to: `null`.
  - names (List[String]): Names for the variant, for example a RefSNP ID. Defaults to: `null`.
  - quality (Float): A measure of how likely this variant is to be real. A higher value is better. Defaults to: `null`.
  - referenceBases (String): The reference bases for this variant. They start at the given position. Defaults to: `null`.
  - referenceName (String): The reference on which this variant occurs. (such as `chr20` or `X`) Defaults to: `null`.
  - start (String): The position at which this variant occurs (0-based). This corresponds to the first base of the string of reference bases. Defaults to: `null`.
  - variantSetId (String): The ID of the variant set this variant belongs to. Defaults to: `null`.
  """

  defstruct [
    :"info",
    :"alternateBases",
    :"calls",
    :"created",
    :"end",
    :"filter",
    :"id",
    :"names",
    :"quality",
    :"referenceBases",
    :"referenceName",
    :"start",
    :"variantSetId"
  ]
end

defimpl Poison.Decoder, for: GoogleApi.Genomics.V1.Model.Variant do
  import GoogleApi.Genomics.V1.Deserializer
  def decode(value, options) do
    value
    |> deserialize(:"calls", :list, GoogleApi.Genomics.V1.Model.VariantCall, options)
  end
end

defimpl Poison.Encoder, for: GoogleApi.Genomics.V1.Model.Variant do
  def encode(value, options) do
    GoogleApi.Genomics.V1.Deserializer.serialize_non_nil(value, options)
  end
end