google_api_genomics

# Copyright 2017 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.


# NOTE: This class is auto generated by the swagger code generator program.
# https://github.com/swagger-api/swagger-codegen.git
# Do not edit the class manually.

defmodule GoogleApi.Genomics.V1.Model.ReferenceSet do
  @moduledoc """
  A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references.  For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)

  ## Attributes

  - assemblyId (String): Public id of this reference set, such as `GRCh37`. Defaults to: `null`.
  - description (String): Free text description of this reference set. Defaults to: `null`.
  - id (String): The server-generated reference set ID, unique across all reference sets. Defaults to: `null`.
  - md5checksum (String): Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string `reference.md5checksum` (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format. Defaults to: `null`.
  - ncbiTaxonId (Integer): ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different `ncbiTaxonId`, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome. Defaults to: `null`.
  - referenceIds (List[String]): The IDs of the reference objects that are part of this set. `Reference.md5checksum` must be unique within this set. Defaults to: `null`.
  - sourceAccessions (List[String]): All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `NC_000001.11`. Defaults to: `null`.
  - sourceUri (String): The URI from which the references were obtained. Defaults to: `null`.
  """

  defstruct [
    :"assemblyId",
    :"description",
    :"id",
    :"md5checksum",
    :"ncbiTaxonId",
    :"referenceIds",
    :"sourceAccessions",
    :"sourceUri"
  ]
end

defimpl Poison.Decoder, for: GoogleApi.Genomics.V1.Model.ReferenceSet do
  def decode(value, _options) do
    value
  end
end

defimpl Poison.Encoder, for: GoogleApi.Genomics.V1.Model.ReferenceSet do
  def encode(value, options) do
    GoogleApi.Genomics.V1.Deserializer.serialize_non_nil(value, options)
  end
end