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Provides functions for fast matrix inversion, creation of empirical CDF from sample data including handling of asymmetric errors, and fitting to a funtion using chi-squared. The fitting procedure return the full covariance matrix describing the fitted parameters.
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lib/distributions.ex
defmodule Chi2fit.Distribution do
# Copyright 2012-2017 Pieter Rijken
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
@moduledoc """
Provides various distributions.
"""
import Chi2fit.Utilities
defmodule UnsupportedDistributionError do
defexception message: "Unsupported distribution function"
end
@doc """
Returns the model for a name.
The kurtosis is the so-called 'excess kurtosis'.
Supported disributions:
"wald" - The Wald or Inverse Gauss distribution,
"weibull" - The Weibull distribution,
"exponential" - The exponential distribution,
"poisson" - The Poisson distribution,
"normal" - The normal or Gaussian distribution,
"fechet" - The Fréchet distribution,
"nakagami" - The Nakagami distribution,
"sep" - The Skewed Exponential Power distribution (Azzalini),
"erlang" - The Erlang distribution,
"sep0" - The Skewed Exponential Power distribution (Azzalini) with location parameter set to zero (0).
## Options
Available only for the SEP distribution, see 'sepCDF/5'.
"""
@spec model(name::String.t, options::Keyword.t) :: any
def model(name, options \\ []) do
params = options[:pars] || nil
case name do
"constant" -> %Distribution.Constant{pars: params}
"uniform" -> %Distribution.Uniform{pars: params}
"wald" -> %Distribution.Wald{pars: params}
"weibull" -> %Distribution.Weibull{pars: params}
"exponential" -> %Distribution.Exponential{pars: params}
"frechet" -> %Distribution.Frechet{pars: params}
"nakagami" -> %Distribution.Nakagami{pars: params}
"poisson" -> %Distribution.Poisson{pars: params}
{"poisson", period} when is_number(period) and period>0 -> %Distribution.Poisson{pars: params,period: period}
"erlang" -> %Distribution.Erlang{pars: params}
{"erlang", batches} when is_number(batches) and batches>0 -> %Distribution.Erlang{pars: params,batches: batches}
"normal" -> %Distribution.Normal{pars: params}
"sep" -> %Distribution.SEP{pars: params,options: options}
"sep0" -> %Distribution.SEP{pars: params,offset: 0.0, options: options}
unknown ->
raise UnsupportedDistributionError, message: "Unsupported cumulative distribution function '#{inspect unknown}'"
end
end
@doc """
Guesses what distribution is likely to fit the sample data
"""
@spec guess(sample::[number], n::integer, list::[String.t] | String.t) :: [any]
def guess(sample,n \\ 100,list \\ ["exponential","poisson","normal","erlang","wald","sep","weibull","frechet","nakagami"])
def guess(sample,n,list) when is_integer(n) and n>0 and is_list(list) do
{{skewness,err_s},{kurtosis,err_k}} = sample |> cullen_frey(n) |> cullen_frey_point
list
|> Enum.flat_map(
fn
distrib ->
r = sample
|> guess(n,distrib)
|> Enum.map(fn {s,k}->((skewness-s)/err_s)*((skewness-s)/err_s) + ((kurtosis-k)/err_k)*((kurtosis-k)/err_k) end)
|> Enum.min
[{distrib,r}]
end)
|> Enum.sort(fn {_,r1},{_,r2} -> r1<r2 end)
end
def guess(_sample,n,distrib) when is_integer(n) and n>0 do
model = model(distrib)
params = 1..Distribution.size(model)
1..n
|> Enum.map(fn _ -> Enum.map(params, fn _ -> 50*:rand.uniform end) end)
|> Enum.flat_map(fn
pars ->
try do
s = Distribution.skewness(model).(pars)
k = Distribution.kurtosis(model).(pars)
[{s,k}]
rescue
_error -> []
end
end)
end
end